PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g53650.3.p
Common NameBRADI_1g53650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 439aa    MW: 48750.2 Da    PI: 8.266
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g53650.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-17108157155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Bradi1g53650.3.p 108 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 157
                       78*******************......55************************998 PP

2AP241.53.4e-13200250155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  Bradi1g53650.3.p 200 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAVRFNG 250
                       89********.7******...5...334336**********99**********99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9108157IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16108166IPR016177DNA-binding domain
PROSITE profilePS5103217.728109165IPR001471AP2/ERF domain
CDDcd000186.43E-11109164No hitNo description
SMARTSM003802.1E-31109171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-17109165IPR001471AP2/ERF domain
PfamPF008471.6E-8200249IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-16200258IPR016177DNA-binding domain
CDDcd000181.06E-25200258No hitNo description
PROSITE profilePS5103216.028201258IPR001471AP2/ERF domain
SMARTSM003803.1E-31201264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-16201258IPR001471AP2/ERF domain
PRINTSPR003672.0E-6202213IPR001471AP2/ERF domain
PRINTSPR003672.0E-6240260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVLDLNAESP GGSGSATSSS SPPDSGGFRF DLLGGSADDE GCLLPVMTHQ LFPSPDAGFH  60
AAAAAVAASD DSPPLPPDSL PRLPADLGVA PGGAGGKKSR RGPRSRSSQY RGVTFYRRTG  120
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGLEA DINFSLNDYE EDLKQMKNWT  180
KEEFVHILRR QSTGFARGNS KYRGVTLHKC GRWEARMGQL LGKKYIYLGL FDSEIEAARA  240
YDRAAVRFNG REAVTNFDST SYDRDVLPET ENEAVVDEDI IDLNLRISQP KVHDLKGDDI  300
LTGFELSCDS PQVTRPFVSQ LILSGRYTPK HQFNPRINIC MHLLVWASLL MSRKYLWRKD  360
LTWVPSPSPL GHGKCRVPDP LCHCSLLQHH QDSLPPPNPI HSPATGCTFL RRPDRHPFSY  420
RWRLYGLLVN QLISAICL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228211.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotP479272e-88AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0Q3LAZ30.0A0A0Q3LAZ3_BRADI; Uncharacterized protein
STRINGBRADI1G53650.41e-175(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-89related to AP2.7